Publications:
2011-
G. Khelashvili, D. Harries, How sterol tilt regulates properties and organization of lipid membranes and membrane insertions Chem. Phys. Lip. 169, 113-123 (2013). G. Saper, S. Kler, R. Asor, A. Oppenheim, U. Raviv, D. Harries, Effect of capsid confinement on the chromatin organization of the SV40 minichromosome Nuc. Acid. Res. 41, 1569-1580 (2013).[PDF] [DOI: 10.1093/nar/gks1270]
G. Khelashvili, D. Harries, How cholesterol tilt modulates the mechanical properties of saturated and unsaturated lipid membranes Phys. Chem. B 117, 2411–2421 (2013). [PDF] [DOI: 10.1021/jp3122006]
S. Sukenik, L. Sapir, R. Gilman-Politi, D. Harries,
Diversity in the mechanisms of cosolute action on biomolecular processes Faraday Disc. 160, 225-237 (2013). [PDF] [Discussion] [draft] [DOI: 10.1039/C2FD20101A]
S. Kler, R. Asor, C. Li, A. Ginsburg, D. Harries, A. Oppenheim, A. Zlotnick, and U. Raviv, RNA encapsidation by SV40-derived nanoparticles follows a rapid two-state mechanism. J. Am. Chem. Soc. 134, 8823–8830 (2012) [PDF] [DOI: 10.1021/ja2110703]
S. Sukenik, and D. Harries, Insights into the disparate action of osmolytes and
macromolecular crowders on amyloid formation, Prion 6, 26-31 (2012). [PDF] [DOI: 10.4161/pri.6.1.18132]
D. Harries, G. Khelashvili, Coarse Grained Methods: Applications to Membranes in "Comprehensive Biophysics" Vol 9 Simulation and Modeling, Ed. H. Weinstein, Elsevier, 53-75 (2012). [PDF] [DOI: 10.1016/B978-0-12-374920-8.00905-X]
R. Gilman-Politi and D. Harries, Unraveling the molecular mechanism of enthaply driven peptide folding by polyol osmolytes, J. Chem. Theo. Comp. 7, 3816-3828 (2011). [PDF] O.I. Wilner, R. Orbach, A. Henning, C. Teller, O. Yehezkeli, M. Mertig, D. Harries, and I. Willner, Self-assembly of DNA nanotubes with controllable diameters, Nature Comm. 2, 540 (2011). [PDF] G. Khelashvili, M. Rappolt, S. Chiu, G. Pabst and D. Harries, Impact of sterol tilt on membrane bending rigidity in
cholesterol and 7DHC-containing DMPC membranes, Soft Matter 7,
D.
Ben-Yaakov, D. Andelman, R. Podgornik, D. Harries, Ion-specific
hydration effects: Extending the Poisson-Boltzmann theory, Curr. Opin.
Coll. Sci. 16, 542-550 (2011). [PDF] [Selected for Faculty of 1000 Biology] L. Ziserman, A. Mor, D. Harries, D. Danino, Curvature instability in chiral amphihpile self-assembly, Phys. Rev. Lett. 106, 238105 (2011). [PDF] [Featured as Physics synopses] T. Lavy, D. Harries, A. Goldblum, Molecular properties from conformational ensembles: 1. dipole moments of Moleculaes with multiple internal rotations, J. Phys. Chem. A 115, 5794–5809 (2011). [PDF] L. Sapir, D. Harries, Linking trehalose self-association with binary aqueous solution equation of state, J. Phys. Chem. B 115, 624-634 (2011). [PDF] S. Sukenik, R. Politi, L. Ziserman, D. Danino, A. Friedler, D. Harries, Crowding alone cannot account for cosolute effect on amyloid aggregation, PLoS ONE 6, e15608 (2011). [PDF] 2006-2010
P.A. Gurnev, D. Harries, V.A. Parsegian, S.M. Bezrukov, Osmotic stress regulates the strength and kinetics of sugar binding to the maltoporin channel, J. Phys.: Cond. Matt. 22, 454110
(2010). [PDF] J. Galanis, R. Nossal, W. Losert, D. Harries, Nematic order in small systems: measuring the elastic and wall-anchoring constants in vibrofluidized granular rods, Phys. Rev. Lett. 105, 168001
(2010). [PDF] G. Khelashvili, D. Harries, Modeling signaling processes across cellular membranes using a mesoscopic approach. In Ann. Rep. Comp. Chem. Vol. 6, Eds. R.A. Wheeler & N. Baker, 237-261
(2010). [PDF] R. Politi, D. Harries, Enthalpically driven peptide stabilization by protective osmolytes, Chem. Comm. 46, 6449–6451
(2010). [PDF] [selected for cover] G. Khelashvili, G. Pabst,
D. Harries, Cholesterol Orientation and Tilt Modulus in DMPC bilayers, J. Phys. Chem B 114, 7524-7534
(2010). [PDF] J. Galanis, R. Nossal,
D. Harries, Depletion Forces Drive Polymer-like Self-Assembly in Vibrofluidized Granular Materials,
Soft Matter 6, 1026-1034
(2010). [PDF]
[Supporting material]
G. Khelashvili,
D. Harries, H. Weinstein,
Modeling Membrane Deformations and Lipid Demixing upon
Protein-Membrane Interaction: The BAR Dimer Adsorption,
Biophys. J. 97, 1626-1635
(2009). [PDF]
[Supporting material]
D. Ben-Yaacov, D. Andelman, D. Harries, R. Podgornik, Beyond standard Poisson-Boltzmann
theory: ion-specific interactions in
aqueous solutions
, J. Phys.: Condens. Matter 21, 424106 (2009).
[PDF]
R. Politi, L. Sapir, D. Harries,
The Impact of Polyols on Water Structure in Solution: A Computational Study
, J. Phys. Chem. A 113, 7548-7555
(2009). [PDF]
P.A. Gurnev, D. Harries, V.A. Parsegian, S.M. Bezrukov,
The Dynamic Side of the Hofmeister Effect: A Single-Molecule Nanopore
Study of Specific Complex Formation, ChemPhysChem 10, 1445-1449
(2009). [PDF]
D. Danino, E. Kesselman, G. Saper, H. I. Petrache, D. Harries,
Osmotically induced reversible transitions in lipid-DNA mesophases, Biophys. J. 96,
L43-L45 (2009). [PDF]
[Additional Supporting material]
D. Ben-Yaacov, D. Andelman, D. Harries, R. Podgornik, Ions in mixed dielectric solvents: Density profiles
and osmotic pressure between charged interfaces, J. Phys. Chem. B 113, 6001-6011 (2009).
[PDF]
V. B. Teif, D. Harries, D.Y. Lando, A. Ben-Shaul, Matrix formalism for sequence-specific polymer binding to
multicomponent lipid membranes. In, "Membrane-active peptides: methods and results on
structure and function" , Ed. M. Castanho, International University Line,
La Jolla (2009). [PDF]
R. Podgornik, D. Harries, J. DeRouchey, H. H. Strey, and V. A. Parsegian, Interactions in
macromolecular complexes used as nonviral vectors for gene delivery.
In "Gene and Cell Therapy: Therapeutic Mechanisms and Strategies" , Ed. N. Smyth Templeton, 3rd ed. CRC press, Boca Raton. 443-485. (2008).
G. Khelashvili, H. Weinstein, D. Harries, Protein Diffusion on Charged Membranes: A Dynamic Mean-Field Model Describes Time Evolution and Lipid Reorganization, Biophys. J. 94, 2580-2597 (2008). [PDF] [Selected for Faculty of 1000 Biology]
V. B. Teif, D. Harries, D.Y. Lando, A. Ben-Shaul, Matrix formalism for site-specific binding of unstructured proteins to multicomponent lipid membranes, J. Pep. Sci. 14, 368-373 (2008). [PDF]
D. Harries and J. Rösgen, A Practical Guide on How Osmolytes Modulate Macromolecular
Properties, Meth. Cell Bio. 84, 679-735 (2008). [PDF]
H.I. Petrache, D. Harries, V.A. Parsegian. Measurments of lipid forces by x-ray diffraction and osmotic stress, Meth. Mol. Bio.400, 405 (2007). [PDF]
D. Harries, R. Podgornik, V.A. Parsegian, E.
Mar-Or, D. Andelman, Ion Induced Lamellar-Lamellar Phase Transition in
Charged Surfactants, J. Chem. Phys. 124, 224702 (2006). [PDF]
M.C. Gondré-Lewis, Petrache HI, C. A. Wassif , D. Harries, A.
Parsegian, F. D. Porter, Y. P. Loh, Abnormal sterols in
cholesterol-deficiency diseases cause secretory granule malformation
and decreased membrane curvature, J. Cell. Sci. 119, 1875 (2006).[PDF]
H. I. Petrache, S. Tristram-Nagle, D. Harries, N. Kucerka, J. F. Nagle,
V. A. Parsegian, Swelling of phospholipids by monovalent salt J. Lipid
Res. 47, 302-309 (2006). [PDF]
J. Galanis, D. Harries, D. L. Sackett, W. Losert, R. Nossal,
Spontaneous Patterning of confined granular rods, Phys. Rev. Lett. 96,
028002 (2006). [PDF]
2001-2005
H. I. Petrache, I. Kimchi , D. Harries, V. A. Parsegian. Measured depletion of ions at the biomembrane interfaces, J Am Chem Soc. 127, 11546-11547 (2005). [PDF]
H. Liang, D. Harries, G. C. L. Wong. Polymorphism of DNA-anionic liposome complexes reveals hierarchy of ion-mediated interactions, P. Natl. Acad. Sci. USA 102, 11173-11178 (2005). [PDF] [Featured as an SSRL scientific highlight]
H. I. Petrache, D. Harries, V. A. Parsegian. Alteration of lipid membrane elasticity by cholesterol and its metabolic precursors, Macromol. Symp. 219, 39-50 (2005).[PDF] [Featured on C&EN news]
D. Harries, D. C. Rau, V. A. Parsegian. Soultes probe hydration in specific association of cyclodextrin and adamantane, J. Am. Chem. Soc. 127, 2184-2190 (2005). [PDF]
R. Podgornik, D. Harries, H.H. Strey, V.A. Parsegian. Molecular interactions in lipids, DNA, and Lipid-DNA complexes in Gene Therapy - therapeutic mechanisms and strategies, N. Smyth Templeton edt., 2nd ed. (2004). [PDF]
D. Harries, A. Ben-Shaul, I. Szleifer. Enveloping of charged proteins by lipid bilayers, J. Phys. Chem. B 108, 1491-1496 (2004). [PDF]
H.I. Petrache, S. Tristram-Nagle, K. Gawrisch, D. Harries, V.A. Parsegian, J.F. Nagle. Structure and fluctuations of charged phosphatidylserine bilayers in the absence of salt, Biophys. J. 86, 1574-1586 (2004). [PDF]
D. Harries, V.A. Parsegian. Gibbs adsorption isotherm combined with Monte Carlo sampling to see the action of cosolutes on protein folding, Proteins 57, 311-321 (2004). [PDF]
D. Harries, S. May and A. Ben-Shaul. Curvature and charge modulations in lamellar DNA-lipid complexes, J. Phys. Chem. B 107, 3624-3630 (2003). [PDF]
D. Harries, S. May, A. Ben-Shaul. Adsorption of charged macromolecules on mixed fluid membranes, Coll. Surf. A 208, 41-50 (2002). [PDF]
S. May, D. Harries and A. Ben-Shaul. Macroion-induced compositional instability of binary fluid membranes, Phys. Rev. Lett. 89, art. no. 268102 (2002). [PDF]
D. Harries. Electrostatic interactions between macromolecules and lipid bilayers, Ph.D. Thesis, Hebrew University (2001). [PDF]
1997-2000
K. Wagner, D. Harries, S. May, V. Kahl, J.O. Raedler and A. Ben-Shaul. Direct Evidence for Counterion Release Upon Cationic Lipid-DNA Condensation, Langmuir 16, 303-306 (2000). [PDF]
S. May, D. Harries and A. Ben-Shaul. The Phase Behavior of Cationic Lipid-DNA Complexes, Biophys. J. 78, 1681-1697 (2000). [PDF]
S. May, D. Harries and A. Ben-Shaul. Lipid Demixing and Protein-Protein Interactions in the Adsorption of Charged Proteins on Mixed Membranes, Biophys. J. 79, 1747-1760 (2000). [PDF]
D. Harries. Solving the Poisson-Boltzmann Equation for Two Parallel Cylinders, Langmuir 14 (12), 3149-3152 (1998). [PDF]
S. Y. Park, D. Harries and W. M. Gelbart. Topological Defects and the Optimum Size of DNA Condensates, Biophysical J. 75, 714-720 (1998). [PDF]
D. Harries, S. May, W. M. Gelbart and A. Ben-Shaul. Structure, Stability and Thermodynamics of Lamellar DNA-Lipid Complexes, Biophys. J. 75, 159-173 (1998). [PDF]
D. Harries and A. Ben-Shaul. Conformational Chain Statistics in a Model Lipid Bilayer: Comparison Between Mean Field and Monte Carlo Calculations, J. Chem. Phys. 106, 1609-1619 (1997). [PDF]