Publications:


2011-


  S. Sukenik, Y. Boyarski D. Harries Effect of salt on the formation of salt-bridges in β-hairpin peptides Chem. Comm. (2014, in press)
[PDF] [DOI: 10.1039/c4cc03195d]

  D. Harries, U. Raviv, Soft Matter Physics of Lipid Membrane–Based Assemblies. In "Liposomes, Lipid Bilayers and Model Membranes: From Basic Research to Applications" , Ed. G. Pabst, N. Kucerka, M.-P. Nieh, and J. Katsaras. CRC press, Boca Raton. 3-26. (2014).
[PDF]  

  L. Sapir, D. Harries, Origin of enthalpic depletion forces. J. Phys. Chem. Lett. 5, 1061-1065 (2014).
[PDF] [DOI: 10.1021/jz5002715]

  G. Khelashvili, N. Johner G. Zhao, D. Harries, H.L. Scott, Molecular origins of bending rigidity in lipids wuth isolated and conjugated double bonds: The effect of cholesterol. Chem. Phys. Lip. 178, 18-26 (2014).
[PDF] [DOI: 10.1016/j.chemphyslip.2013.12.012]

  S. Sukenik*, L. Sapir*, D. Harries,  Balance of enthalpy and entropy in depletion forces. Curr. Opin. Coll. Sci. 18, 495-501 (2013).
[PDF] [DOI: 10.1016/j.cocis.2013.10.002][ *equal contribution]

  S. Sukenik, D. Harries, A. Friedler,  Biophysical Chemistry In: Elsevier Reference Module in Chemistry, Molecular Sciences and Chemical Engineering. Reedijk, J. (Ed.)
[PDF]

 D. Harries, S. May, A. Ben-Shaul,  Counterion release in membrane-biopolymer interactions Soft matter. 9, 9268-9284 (2013).
[PDF] [DOI: 10.1039/C3SM51419F]

G. Khelashvili, B. Kollmitzer, P. Heftberger, G. Pabst, D. HarriesCalculating the bending modulus for multicomponent lipid membranes in different thermodynamic phases J. Chem. Theo. Comp. 9, 3866–3871 (2013).
[PDF] [DOI: 10.1021/ct400492e]

 L. Moshe, G. Saper, O. Szekely, Y. Linde, C. Gilon, D. Harries, U. Raviv, Modulating the structure and interactions of lipid-peptide complexes by varying membrane composition and solution conditions Soft Matter 9, 7117-7126  (2013).
[PDF] [DOI: 10.1039/C3SM00105A]

G. Khelashvili, D. HarriesHow sterol tilt regulates properties and organization of lipid membranes and membrane insertions Chem. Phys. Lip. 169, 113-123 (2013).
[PDF] [DOI: 10.1016/ j.chemphyslip.2012.12.006]

G. Saper, S. Kler, R. Asor, A. Oppenheim, U. Raviv, D. Harries, Effect of capsid confinement on the chromatin organization of the SV40 minichromosome Nuc. Acid. Res. 41, 1569-1580 (2013).
[PDF] [DOI: 10.1093/nar/gks1270]

G. Khelashvili, D. HarriesHow cholesterol tilt modulates the mechanical properties of saturated and unsaturated lipid membranes Phys. Chem. B 1172411–2421 (2013).
[PDF] [DOI: 10.1021/jp3122006]

S. Sukenik, L. Sapir, R. Gilman-Politi, D. Harries, Diversity in the mechanisms of cosolute action on biomolecular processes Faraday Disc. 160, 225-237 (2013).
[PDF] [Discussion] [draft] [DOI: 10.1039/C2FD20101A]

S. Kler, R. Asor, C. Li, A. Ginsburg, D. Harries, A. Oppenheim, A. Zlotnick, and U. Raviv, RNA encapsidation by SV40-derived nanoparticles follows a rapid two-state mechanism. J. Am. Chem. Soc. 1348823–8830 (2012) 
[PDF] [DOI: 10.1021/ja2110703]

S. Sukenik, and D. Harries, Insights into the disparate action of osmolytes and macromolecular crowders on amyloid formation, Prion 6, 26-31 (2012).
[PDF] [DOI: 10.4161/pri.6.1.18132]

D. Harries, G. Khelashvili, Coarse Grained Methods: Applications to Membranes in "Comprehensive Biophysics" Vol 9 Simulation and Modeling, Ed. H. Weinstein, Elsevier, 53-75 (2012).
[PDF] [DOI: 10.1016/B978-0-12-374920-8.00905-X]

R. Gilman-Politi and D. Harries, Unraveling the molecular mechanism of enthaply driven peptide folding by polyol osmolytes, J. Chem. Theo. Comp. 7, 3816-3828 (2011). [PDF]

O.I. Wilner, R. Orbach, A. Henning, C. Teller, O. Yehezkeli, M. Mertig, D. Harries, and I. Willner, Self-assembly of DNA nanotubes with controllable diameters, Nature Comm. 2, 540 (2011). [PDF]

G. Khelashvili, M. Rappolt, S. Chiu, G. Pabst and D. Harries, Impact of sterol tilt on membrane bending rigidity in cholesterol and 7DHC-containing DMPC membranes, Soft Matter 7, 
10299-10312 (2011). [PDF]  

D. Ben-Yaakov, D. Andelman, R. Podgornik, D. Harries, Ion-specific hydration effects: Extending the Poisson-Boltzmann theory, Curr. Opin. Coll. Sci. 16, 542-550 (2011). [PDF] [Selected for Faculty of 1000 Biology]  

L. Ziserman, A. Mor, D. Harries, D. Danino, Curvature instability in chiral amphihpile self-assembly, Phys. Rev. Lett. 106, 238105 (2011). [PDF] [Featured as Physics synopses]

T. Lavy, D. Harries, A. Goldblum, Molecular properties from conformational ensembles: 1. dipole moments of Moleculaes with multiple internal rotations, J. Phys. Chem. A 115, 5794–5809 (2011). [PDF]  

L. Sapir, D. Harries, Linking trehalose self-association with binary aqueous solution equation of state, J. Phys. Chem. B 115, 624-634 (2011). [PDF]

S. Sukenik, R. Politi, L. Ziserman, D. Danino, A. Friedler, D. Harries, Crowding alone cannot account for cosolute effect on amyloid aggregation, PLoS ONE 6, e15608 (2011). [PDF]  


2006-2010


P.A. Gurnev, D. Harries, V.A. Parsegian, S.M. Bezrukov, Osmotic stress regulates the strength and kinetics of sugar binding to the maltoporin channel, J. Phys.: Cond. Matt. 22, 454110 (2010). [PDF]

J. Galanis R. Nossal, W. Losert, D. Harries, Nematic order in small systems: measuring the elastic and wall-anchoring constants in vibrofluidized granular rods, Phys. Rev. Lett. 105, 168001 (2010). [PDF]

G. Khelashvili, D. Harries, Modeling signaling processes across cellular membranes using a mesoscopic approach. In Ann. Rep. Comp. Chem. Vol. 6, Eds. R.A. Wheeler & N. Baker, 237-261 (2010). [PDF]

R. Politi, D. Harries, Enthalpically driven peptide stabilization by protective osmolytes, Chem. Comm. 466449–6451 (2010). [PDF] [selected for cover]

G. Khelashvili, G. Pabst, D. Harries, Cholesterol Orientation and Tilt Modulus in DMPC bilayers, J. Phys. Chem B 114, 7524-7534 (2010). [PDF

J. Galanis, R. Nossal, D. Harries, Depletion Forces Drive Polymer-like Self-Assembly in Vibrofluidized Granular Materials, Soft Matter 6, 1026-1034 (2010). [PDF] [Supporting material]


G. Khelashvili, D. Harries, H. Weinstein, Modeling Membrane Deformations and Lipid Demixing upon Protein-Membrane Interaction: The BAR Dimer Adsorption, Biophys. J. 97, 1626-1635 (2009). [PDF] [Supporting material]


D. Ben-Yaacov, D. Andelman,  D. Harries, R. Podgornik, Beyond standard Poisson-Boltzmann theory: ion-specific interactions in aqueous solutions , J. Phys.: Condens. Matter 21, 424106 (2009). [PDF]

R. Politi, L. Sapir, D. Harries, The Impact of Polyols on Water Structure in Solution: A Computational Study , J. Phys. Chem. A 113, 7548-7555 (2009). [PDF]

P.A. Gurnev, D. Harries, V.A. Parsegian, S.M. Bezrukov, The Dynamic Side of the Hofmeister Effect: A Single-Molecule Nanopore Study of Specific Complex Formation, ChemPhysChem 10, 1445-1449 (2009). [PDF]

D. Danino, E. Kesselman, G. Saper, H. I. Petrache, D. Harries, Osmotically induced reversible transitions in lipid-DNA mesophases, Biophys. J. 96, L43-L45 (2009). [PDF] [Additional Supporting material]

D. Ben-Yaacov, D. Andelman,  D. Harries, R. Podgornik, Ions in mixed dielectric solvents: Density profiles and osmotic pressure between charged interfaces, J. Phys. Chem. B 113, 6001-6011 (2009). [PDF]

V. B. Teif,  D. Harries, D.Y. Lando, A. Ben-Shaul, Matrix formalism for sequence-specific polymer binding to multicomponent lipid membranes. In, "Membrane-active peptides: methods and results on structure and function" , Ed. M. Castanho, International University Line, La Jolla (2009). [PDF]

R. Podgornik,  D. Harries, J. DeRouchey, H. H. Strey, and V. A. Parsegian, Interactions in macromolecular complexes used as nonviral vectors for gene delivery. In "Gene and Cell Therapy: Therapeutic Mechanisms and Strategies" , Ed. N. Smyth Templeton, 3rd ed. CRC press, Boca Raton. 443-485. (2008).

G. Khelashvili, H. Weinstein, D. Harries, Protein Diffusion on Charged Membranes: A Dynamic Mean-Field Model Describes Time Evolution and Lipid Reorganization, Biophys. J. 94, 2580-2597 (2008). [PDF] [Selected for Faculty of 1000 Biology]

V. B. Teif,  D. Harries, D.Y. Lando, A. Ben-Shaul, Matrix formalism for site-specific binding of unstructured proteins to multicomponent lipid membranes, J. Pep. Sci.  14, 368-373 (2008). [PDF]

 D. Harries and J. Rösgen, A Practical Guide on How Osmolytes Modulate Macromolecular Properties, Meth. Cell Bio. 84, 679-735 (2008). [PDF]


H.I. Petrache, D. Harries, V.A. Parsegian. Measurments of lipid forces by x-ray diffraction and osmotic stress, Meth. Mol. Bio.400, 405 (2007). [PDF]

D. Harries, R. Podgornik, V.A. Parsegian, E. Mar-Or, D. Andelman, Ion Induced Lamellar-Lamellar Phase Transition in Charged Surfactants, J. Chem. Phys. 124, 224702 (2006). [PDF]

  M.C. Gondré-Lewis, Petrache HI, C. A. Wassif , D. Harries, A. Parsegian, F. D. Porter, Y. P. Loh, Abnormal sterols in cholesterol-deficiency diseases cause secretory granule malformation and decreased membrane curvature, J. Cell. Sci. 119, 1875 (2006).[PDF

  H. I. Petrache, S. Tristram-Nagle, D. Harries, N. Kucerka, J. F. Nagle, V. A. Parsegian, Swelling of phospholipids by monovalent salt J. Lipid Res. 47, 302-309 (2006). [PDF]  

  J. Galanis, D. Harries, D. L. Sackett, W. Losert, R. Nossal, Spontaneous Patterning of confined granular rods, Phys. Rev. Lett. 96, 028002 (2006). [PDF]


2001-2005


H. I. Petrache, I. Kimchi , D. Harries, V. A. Parsegian. Measured depletion of ions at the biomembrane interfaces, J Am Chem Soc. 127, 11546-11547 (2005). [PDF]


H. Liang, D. Harries, G. C. L. Wong. Polymorphism of DNA-anionic liposome complexes reveals hierarchy of ion-mediated interactions, P. Natl. Acad. Sci. USA 102, 11173-11178 (2005). [PDF]  [Featured as an SSRL scientific highlight]


H. I. Petrache, D. Harries, V. A. Parsegian. Alteration of lipid membrane elasticity by cholesterol and its metabolic precursors, Macromol. Symp. 219, 39-50 (2005).[PDF] [Featured on C&EN news]


D. Harries, D. C. Rau, V. A. Parsegian. Soultes probe hydration in specific association of cyclodextrin and adamantane, J. Am. Chem. Soc. 127, 2184-2190 (2005). [PDF]


R. Podgornik, D. Harries, H.H. Strey, V.A. Parsegian. Molecular interactions in lipids, DNA, and Lipid-DNA complexes in Gene Therapy - therapeutic mechanisms and strategies, N. Smyth Templeton edt., 2nd ed. (2004). [PDF]


  D. Harries, A. Ben-Shaul, I. Szleifer. Enveloping of charged proteins by lipid bilayers, J. Phys. Chem. B 108, 1491-1496 (2004). [PDF]


  H.I. Petrache, S. Tristram-Nagle, K. Gawrisch, D. Harries, V.A. Parsegian, J.F. Nagle. Structure and fluctuations of charged phosphatidylserine bilayers in the absence of salt, Biophys. J. 86, 1574-1586 (2004). [PDF]


  D. Harries, V.A. Parsegian. Gibbs adsorption isotherm combined with Monte Carlo sampling to see the action of cosolutes on protein folding, Proteins 57, 311-321 (2004). [PDF]


D. Harries, S. May and A. Ben-Shaul. Curvature and charge modulations in lamellar DNA-lipid complexes, J. Phys. Chem. B 107, 3624-3630 (2003). [PDF]


D. Harries, S. May, A. Ben-Shaul. Adsorption of charged macromolecules on mixed fluid membranes, Coll. Surf. A 208, 41-50 (2002). [PDF]


S. May, D. Harries and A. Ben-Shaul. Macroion-induced compositional instability of binary fluid membranes, Phys. Rev. Lett. 89, art. no. 268102 (2002). [PDF]


D. Harries. Electrostatic interactions between macromolecules and lipid bilayers, Ph.D. Thesis, Hebrew University (2001). [PDF]



1997-2000


K. Wagner, D. Harries, S. May, V. Kahl, J.O. Raedler and A. Ben-Shaul. Direct Evidence for Counterion Release Upon Cationic Lipid-DNA Condensation, Langmuir 16, 303-306 (2000). [PDF]


 S. May, D. Harries and A. Ben-Shaul. The Phase Behavior of Cationic Lipid-DNA Complexes, Biophys. J. 78, 1681-1697 (2000). [PDF]


 S. May, D. Harries and A. Ben-Shaul. Lipid Demixing and Protein-Protein Interactions in the Adsorption of Charged Proteins on Mixed Membranes, Biophys. J. 79, 1747-1760 (2000). [PDF]


D. Harries. Solving the Poisson-Boltzmann Equation for Two Parallel Cylinders, Langmuir 14 (12), 3149-3152 (1998). [PDF]


  S. Y. Park, D. Harries and W. M. Gelbart. Topological Defects and the Optimum Size of DNA Condensates, Biophysical J. 75, 714-720 (1998). [PDF]


 D. Harries, S. May, W. M. Gelbart and A. Ben-Shaul. Structure, Stability and Thermodynamics of Lamellar DNA-Lipid Complexes, Biophys. J. 75, 159-173 (1998). [PDF]


D. Harries and A. Ben-Shaul. Conformational Chain Statistics in a Model Lipid Bilayer: Comparison Between Mean Field and Monte Carlo Calculations, J. Chem. Phys. 106, 1609-1619 (1997). [PDF]


               

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Publication years:

38